PCMTreePreorderCpp

Fast preorder of the edges in a tree

Provides a C++ backend for multivariate phylogenetic comparative
models implemented in the R-package 'PCMBase'. Can be used in combination
with 'PCMBase' to enable fast and parallel likelihood calculation. Implements
the pruning likelihood calculation algorithm described in Mitov et al. (2020)
<doi:10.1016/j.tpb.2019.11.005>. Uses the 'SPLITT' C++ library for parallel tree traversal
described in Mitov and Stadler (2018) <doi:10.1111/2041-210X.13136>.

Venelin Mitov

PCMBaseCpp

Fast Likelihood Calculation for Phylogenetic Comparative Models

PCMTreePreorderCpp function

<dl><dt>tree</dt>
<dd>a phylo object</dd></dl>

Arguments

Fast preorder of the edges in a tree — PCMTreePreorderCpp

<dl>

<dt>tree</dt>
<dd>a phylo object</dd>

</dl>

PCMTreePreorderCpp: Fast preorder of the edges in a tree

Description

Usage

Value

Arguments

Examples