PCpheno (version 1.34.0)

buildFDMat: Build fitness defect contingency matrix

Description

Function to build a fitness defect contingency matrix where rows correspond to tested genes and columns to experimental conditions.

Usage

buildFDMat(data,genenames,condition)

Arguments

data

List of 'significant' fitness defect scores and the associated genes at different experimental conditions.

condition

Character vector of the different experimental conditions tested

genenames

Character vector of all the tested genes for fitness defect.

Value

Contingency matrix of genes that present significant fitness defect in different experimental conditions.

Examples

 data(GiaeverPheno)
 data(GiaeverExpCdt)
 data(GiaeverGene)
 fitnessData <- getFDgene(GiaeverPheno,condition=GiaeverExpCdt,cutoff=c(20,100,100),mode="generation",subset=c(5,15,20))
 GiaeverPhenoM <- buildFDMat(data=fitnessData,genenames=GiaeverGene,condition=GiaeverExpCdt[,3])