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PEPBVS (version 2.2)

Bayesian Variable Selection using Power-Expected-Posterior Prior

Description

Performs Bayesian variable selection under normal linear models for the data with the model parameters following as prior distributions either the power-expected-posterior (PEP) or the intrinsic (a special case of the former) (Fouskakis and Ntzoufras (2022) , Fouskakis and Ntzoufras (2020) ). The prior distribution on model space is the uniform over all models or the uniform on model dimension (a special case of the beta-binomial prior). The selection is performed by either implementing a full enumeration and evaluation of all possible models or using the Markov Chain Monte Carlo Model Composition (MC3) algorithm (Madigan and York (1995) ). Complementary functions for hypothesis testing, estimation and predictions under Bayesian model averaging, as well as, plotting and printing the results are also provided. The results can be compared to the ones obtained under other well-known priors on model parameters and model spaces.

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Version

Install

install.packages('PEPBVS')

Monthly Downloads

167

Version

2.2

License

GPL (>= 2)

Maintainer

Konstantina Charmpi

Last Published

September 29th, 2025

Functions in PEPBVS (2.2)

print.pep

Printing object of class pep
predict.pep

(Point) Prediction under PEP approach
UScrime_data

US Crime Data
PEPBVS-deprecated

Deprecated functions in package PEPBVS.
estimation.pep

Model averaged estimates
image.pep

Heatmap for top models
PEPBVS-package

Bayesian variable selection using power--expected--posterior prior
peptest

Bayes factor for model comparison
plot.pep

Plots for object of class pep
posteriorpredictive.pep

Posterior predictive distribution under Bayesian model averaging
pep.lm

Bayesian variable selection for Gaussian linear models using PEP through exhaustive search or with the MC3 algorithm
comparepriors.lm

Selected models under different choices of prior on the model parameters and the model space