meantest: Two-sample mean tests for high-dimensional data

Description

This function implements five two-sample mean tests on high-dimensional mean vectors. Let $\mathbf{X} \in \mathbb{R}^p$ and $\mathbf{Y} \in \mathbb{R}^p$ be two $p$-dimensional populations with mean vectors $(\boldsymbol{\mu}_1, \boldsymbol{\mu}_2)$ and covariance matrices $(\mathbf{\Sigma}_1, \mathbf{\Sigma}_2)$, respectively. The problem of interest is to test the equality of the two mean vectors of the two populations: $$H_{0m}: \boldsymbol{\mu}_1 = \boldsymbol{\mu}_2.$$ Suppose $\{\mathbf{X}_1, \ldots, \mathbf{X}_{n_1}\}$ are i.i.d. copies of $\mathbf{X}$, and $\{\mathbf{Y}_1, \ldots, \mathbf{Y}_{n_2}\}$ are i.i.d. copies of $\mathbf{Y}$. We denote dataX=$(\mathbf{X}_1, \ldots, \mathbf{X}_{n_1})^\top\in\mathbb{R}^{n_1\times p}$ and dataY=$(\mathbf{Y}_1, \ldots, \mathbf{Y}_{n_2})^\top\in\mathbb{R}^{n_2\times p}$.

Usage

meantest(dataX,dataY,method='pe.comp',delta=NULL)

Value

method the method type

stat the value of test statistic

pval the p-value for the test.

Arguments

dataX

an $n_1$ by $p$ data matrix

dataY

an $n_2$ by $p$ data matrix

method

the method type (default = 'pe.comp'); chosen from

'clx': the $l_\infty$-norm-based mean test, proposed in Cai et al. (2014);
see meantest.clx for details.
'cq': the $l_2$-norm-based mean test, proposed in Chen and Qin (2010);
see meantest.cq for details.
'pe.cauchy': the PE mean test via Cauchy combination;
see meantest.pe.cauchy for details.
'pe.comp': the PE mean test via the construction of PE components;
see meantest.pe.comp for details.
'pe.fisher': the PE mean test via Fisher's combination;
see meantest.pe.fisher for details.

delta

This is needed only in method='pe.comp'; see meantest.pe.comp for details. The default is NULL.

References

Chen, S. X. and Qin, Y. L. (2010). A two-sample test for high-dimensional data with applications to gene-set testing. Annals of Statistics, 38(2):808–835.

Cai, T. T., Liu, W., and Xia, Y. (2014). Two-sample test of high dimensional means under dependence. Journal of the Royal Statistical Society: Series B: Statistical Methodology, 76(2):349–372.

Yu, X., Li, D., Xue, L., and Li, R. (2022). Power-enhanced simultaneous test of high-dimensional mean vectors and covariance matrices with application to gene-set testing. Journal of the American Statistical Association, (in press):1–14.

Examples

Run this code

n1 = 100; n2 = 100; pp = 500
set.seed(1)
X = matrix(rnorm(n1*pp), nrow=n1, ncol=pp)
Y = matrix(rnorm(n2*pp), nrow=n2, ncol=pp)
meantest(X,Y)

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