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PEtests (version 0.1.0)

meantest.pe.cauchy: Two-sample PE mean test for high-dimensional data via Cauchy combination

Description

This function implements the two-sample PE covariance test via Cauchy combination. Suppose \(\{\mathbf{X}_1, \ldots, \mathbf{X}_{n_1}\}\) are i.i.d. copies of \(\mathbf{X}\), and \(\{\mathbf{Y}_1, \ldots, \mathbf{Y}_{n_2}\}\) are i.i.d. copies of \(\mathbf{Y}\). Let \(p_{CQ}\) and \(p_{CLX}\) denote the \(p\)-values associated with the \(l_2\)-norm-based covariance test (see meantest.cq for details) and the \(l_\infty\)-norm-based covariance test (see meantest.clx for details), respectively. The PE covariance test via Cauchy combination is defined as $$M_{Cauchy} = \frac{1}{2}\tan((0.5-p_{CQ})\pi) + \frac{1}{2}\tan((0.5-p_{CLX})\pi).$$ It has been proved that with some regularity conditions, under the null hypothesis \(H_{0m}: \boldsymbol{\mu}_1 = \boldsymbol{\mu}_2,\) the two tests are asymptotically independent as \(n_1, n_2, p\rightarrow \infty\), and therefore \(M_{Cauchy}\) asymptotically converges in distribution to a standard Cauchy distribution. The asymptotic \(p\)-value is obtained by $$p\text{-value} = 1-F_{Cauchy}(M_{Cauchy}),$$ where \(F_{Cauchy}(\cdot)\) is the cdf of the standard Cauchy distribution.

Usage

meantest.pe.cauchy(dataX,dataY)

Value

stat the value of test statistic

pval the p-value for the test.

Arguments

dataX

an \(n_1\) by \(p\) data matrix

dataY

an \(n_2\) by \(p\) data matrix

References

Chen, S. X. and Qin, Y. L. (2010). A two-sample test for high-dimensional data with applications to gene-set testing. Annals of Statistics, 38(2):808–835.

Cai, T. T., Liu, W., and Xia, Y. (2014). Two-sample test of high dimensional means under dependence. Journal of the Royal Statistical Society: Series B: Statistical Methodology, 76(2):349–372.

Examples

Run this code
n1 = 100; n2 = 100; pp = 500
set.seed(1)
X = matrix(rnorm(n1*pp), nrow=n1, ncol=pp)
Y = matrix(rnorm(n2*pp), nrow=n2, ncol=pp)
meantest.pe.cauchy(X,Y)

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