PGBOAlgorithm-class

PGBOAlgorithm

The class "PGBOAlgorithm" implements the PGBO algorithm: Population Genetics Based Optimizer,
developed by Hervé Le Nagard [1].

Evaluate or optimize designs for nonlinear mixed effects models using the Fisher Information matrix. Methods used in the package refer to
Mentré F, Mallet A, Baccar D (1997) <doi:10.1093/biomet/84.2.429>,
Retout S, Comets E, Samson A, Mentré F (2007) <doi:10.1002/sim.2910>,
Bazzoli C, Retout S, Mentré F (2009) <doi:10.1002/sim.3573>,
Le Nagard H, Chao L, Tenaillon O (2011) <doi:10.1186/1471-2148-11-326>,
Combes FP, Retout S, Frey N, Mentré F (2013) <doi:10.1007/s11095-013-1079-3> and
Seurat J, Tang Y, Mentré F, Nguyen TT (2021) <doi:10.1016/j.cmpb.2021.106126>.

Romain Leroux

PFIM

Population Fisher Information Matrix

France Mentré

Jérémy Seurat

Lucie Fayette

Emmanuelle Comets

Sylvie Retout

PGBOAlgorithm-class function

Objects form the Class <code>PGBOAlgorithm</code> can be created by calls of the form <code>PGBOAlgorithm(...)</code> where
(...) are the parameters for the <code>PGBOAlgorithm</code> objects.

Objects from the Class <code>PGBOAlgorithm</code>

<dl>
 <dt><code>N</code>:</dt>
<dd>A numeric giving the population size.</dd> <dt><code>muteEffect</code>:</dt>
<dd>A numeric giving the mutation effect.</dd> <dt><code>maxIteration</code>:</dt>
<dd>A numeric giving the maximum number of iterations.</dd> <dt><code>seed</code>:</dt>
<dd>A numeric giving the seed.</dd> <dt><code>showProcess</code>:</dt>
<dd>A boolean to show or not the process.</dd> <dt><code>optimalDesign</code>:</dt>
<dd>A <code>Design</code> object giving the optimal design.</dd> <dt><code>iterationAndCriteria</code>:</dt>
<dd>A list giving the optimal criteria at each iteration.</dd> 
</dl>

Slots for <code>PGBOAlgorithm</code> objects

Class "PGBOAlgorithm" — PGBOAlgorithm-class

Objects form the Class <code>PGBOAlgorithm</code> can be created by calls of the form <code>PGBOAlgorithm(...)</code> where
(...) are the parameters for the <code>PGBOAlgorithm</code> objects.

<dl>
 <dt><code>N</code>:</dt>
<dd>A numeric giving the population size.</dd>

 <dt><code>muteEffect</code>:</dt>
<dd>A numeric giving the mutation effect.</dd>

 <dt><code>maxIteration</code>:</dt>
<dd>A numeric giving the maximum number of iterations.</dd>

 <dt><code>seed</code>:</dt>
<dd>A numeric giving the seed.</dd>

 <dt><code>showProcess</code>:</dt>
<dd>A boolean to show or not the process.</dd>

 <dt><code>optimalDesign</code>:</dt>
<dd>A <code>Design</code> object giving the optimal design.</dd>

 <dt><code>iterationAndCriteria</code>:</dt>
<dd>A list giving the optimal criteria at each iteration.</dd>

 
</dl>

PGBOAlgorithm-class: Class "PGBOAlgorithm"

Description

Arguments

Objects from the Class <code>PGBOAlgorithm</code>

Slots for <code>PGBOAlgorithm</code> objects

References