PFIM (version 7.0)

Model: Model

Description

The class Model represents and stores information for a model.

Usage

Model(
  name = character(0),
  modelParameters = list(),
  samplings = numeric(0),
  modelEquations = list(),
  wrapper = function() NULL,
  outputFormula = list(),
  outputNames = character(0),
  variableNames = character(0),
  outcomesWithAdministration = character(0),
  outcomesWithNoAdministration = character(0),
  modelError = list(),
  odeSolverParameters = list(),
  parametersForComputingGradient = list(),
  initialConditions = numeric(0),
  functionArguments = character(0),
  functionArgumentsSymbol = list()
)

Arguments

name

Character vector specifying the model name

modelParameters

List of model parameters

samplings

Numeric vector of sampling times

modelEquations

List containing the model equations

wrapper

Function wrapper for the model (default: function () NULL)

outputFormula

List of output formulas

outputNames

Character vector of output names

variableNames

Character vector of variable names

outcomesWithAdministration

Character vector of outcomes with administration

outcomesWithNoAdministration

Character vector of outcomes without administration

modelError

List defining the error model

odeSolverParameters

List of ODE solver parameters

parametersForComputingGradient

List of parameters for gradient computation

initialConditions

Numeric vector of initial conditions

functionArguments

Character vector of function arguments

functionArgumentsSymbol

List of function argument symbols