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PGSEA (version 1.42.0)
Parametric Gene Set Enrichment Analysis
Description
Parametric Analysis of Gene Set Enrichment
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Version
1.46.0
1.44.0
1.42.0
1.40.0
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Version
1.42.0
License
GPL-2
Maintainer
Karl Dykema
Last Published
March 22nd, 2012
Functions in PGSEA (1.42.0)
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scanSmc
Scan through smc objects
smcPlot
Plot PGSEA results
kegg2smc
KEGG pathway to "smc"
GOLUBmcs
Molecular Concepts prepared at VAI from data created by Golub et al.
go2smc
Gene Ontology 2 "smc"
editSmc
Edit "smc" objects
VAIgsc
Molecular Concepts (Gene Sets) prepared at VAI
VAImcs
Molecular Concepts prepared at VAI
aggregateExprs
Aggregate expression data
writeGmt
writeGmt
convertSmc
Convert Entrez ID based "smc" object
writeSmc
writeSmc
readGmt
readGmt
readSmc
Read SMC files
PGSEA
Parametric Gene Set Enrichment Analysis
nbEset
Reduced Neuroblastoma data set