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PGSEA (version 1.46.0)

Parametric Gene Set Enrichment Analysis

Description

Parametric Analysis of Gene Set Enrichment

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Version

Version

1.46.0

License

GPL-2

Maintainer

Karl Dykema

Last Published

February 15th, 2017

Functions in PGSEA (1.46.0)

VAIgsc

Molecular Concepts (Gene Sets) prepared at VAI
writeSmc

writeSmc
smcPlot

Plot PGSEA results
readGmt

readGmt
nbEset

Reduced Neuroblastoma data set
kegg2smc

KEGG pathway to "smc"
VAImcs

Molecular Concepts prepared at VAI
readSmc

Read SMC files
PGSEA

Parametric Gene Set Enrichment Analysis
GOLUBmcs

Molecular Concepts prepared at VAI from data created by Golub et al.
writeGmt

writeGmt
editSmc

Edit "smc" objects
scanSmc

Scan through smc objects
go2smc

Gene Ontology 2 "smc"
aggregateExprs

Aggregate expression data
convertSmc

Convert Entrez ID based "smc" object