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PGSEA (version 1.46.0)
Parametric Gene Set Enrichment Analysis
Description
Parametric Analysis of Gene Set Enrichment
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Version
Version
1.46.0
1.44.0
1.42.0
1.40.0
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Version
1.46.0
License
GPL-2
Maintainer
Karl Dykema
Last Published
March 22nd, 2012
Functions in PGSEA (1.46.0)
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VAIgsc
Molecular Concepts (Gene Sets) prepared at VAI
writeSmc
writeSmc
smcPlot
Plot PGSEA results
readGmt
readGmt
nbEset
Reduced Neuroblastoma data set
kegg2smc
KEGG pathway to "smc"
VAImcs
Molecular Concepts prepared at VAI
readSmc
Read SMC files
PGSEA
Parametric Gene Set Enrichment Analysis
GOLUBmcs
Molecular Concepts prepared at VAI from data created by Golub et al.
writeGmt
writeGmt
editSmc
Edit "smc" objects
scanSmc
Scan through smc objects
go2smc
Gene Ontology 2 "smc"
aggregateExprs
Aggregate expression data
convertSmc
Convert Entrez ID based "smc" object