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PHYLOGR (version 1.0.12)

Functions for Phylogenetically Based Statistical Analyses

Description

Manipulation and analysis of phylogenetically simulated data sets and phylogenetically based analyses using GLS.

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Version

Install

install.packages('PHYLOGR')

Monthly Downloads

174

Version

1.0.12

License

GPL (>= 2)

Maintainer

Ramon Diaz-Uriarte

Last Published

January 30th, 2026

Functions in PHYLOGR (1.0.12)

prcomp.phylog

Principal Components Analysis from Simulated Data Sets
print.summary.phylog

Printing summaries of PHYLOGR statistical functions
read.phylog.matrix

Read a Phylogenetic Covariance Matrix
read.phylip.data

Read Phylip Infile Data Files
plot.phylog.lm

Plot a phylog.lm object
cor.origin

Correlation Through the Origin
plot.phylog.prcomp

Plot a phylog.prcomp object
summary.phylog.lm

Summarize a phylog.lm object
summary.phylog.prcomp

Summarize a phylog.prcomp object
summary.phylog.cancor

Summarize a phylog.cancor object
read.sim.data

Read Sim Files From PDSIMUL
read.pdi.data

Read Pdi Data Files
read.inp.data

Read Inp Data Files
GarlandJanis.IC

Independet contrasts for Garland & Janis data set
matrix.D

Produce the Matrix D of Garland and Ives (2000) for GLS
Lacertid.IC

Independet contrasts for Bauwens and Diaz-Uriarte (1997) lacertid data set
Lacertid.Original

Bauwens and Diaz-Uriarte (1997) lacertid data
cancor.phylog

Canonical Correlation Analysis from Simulated Data Sets
SimulExample

A simulated data set
Lacertid.varcov

Variance-covariance matrix for lacertids from Bauwens and Diaz-uriarte (1997)
lm.phylog

Linear Models from Simulated Data Sets
Helper.functions

Helper functions
plot.phylog.cancor

Plot a phylog.cancor object
GarlandJanis.Original

Garland & Janis's 1993 data on mammalian running speed and limb length
GarlandJanis.varcov

Phylogenetic variance-covariance matrix for Garland & Janis (1993).
phylog.gls.fit

Phylogenetically-Based GLS Model Fitting