Learn R Programming

PICBayes (version 1.0)

Bayesian Models for Partly Interval-Censored Data

Description

Contains functions to fit proportional hazards (PH) model to partly interval-censored (PIC) data (Pan et al. (2020) ), PH model with spatial frailty to spatially dependent PIC data (Pan and Cai (2021) ), and mixed effects PH model to clustered PIC data. Each random intercept/random effect can follow both a normal prior and a Dirichlet process mixture prior. It also includes the corresponding functions for general interval-censored data.

Copy Link

Version

Install

install.packages('PICBayes')

Monthly Downloads

225

Version

1.0

License

GPL (>= 2)

Maintainer

Chun Pan

Last Published

August 5th, 2021

Functions in PICBayes (1.0)

clusterIC_Z

Mixed effects PH model for clustered general interval-censored data
IC

PH model for general interval-censored data
C

Adjacency matrix of 46 South Carolina counties
clusterIC_int

PH model with random intercept for clustered general interval-censored data
clusterIC_int_DP

PH model with random intercept for clustered general interval-censored data
SurvtoLR

Transform Surv object to data matrix with L and R columns
PICBayes

Bayesian models for partly interval-censored data and general interval-censored data
clusterIC_Z_DP

Mixed effects PH model for clustered general interval-censored data
da1

Partly interva-censored data
coef.PICBayes

Coef method for a PICBayes model
clusterPIC_int

PH model with random intercept for clustered partly interval-censored data
clusterPIC_int_DP

PH model with random intercept for clustered partly interval-censored data data
clusterPIC_trt_DP

PH model with random intercept and random treatment for clustered partly interval-censored data
clusterPIC_trt

PH model with random intercept and random treatment for clustered partly interval-censored data
clusterIC_trt

PH model with random intercept and random treatment for clustered general interval-censored data
spatialIC

PH model for spatial general interval-censored data
mCRC

Colorectal cancer data
clusterIC_trt_DP

PH model with random intercept and random treatment for clustered general interval-censored data
plot.PICBayes

Plot method for a PICBayes model
spatialPIC

PH model for spatial partly interval-censored data
PIC

PH model for partly interval-censored data
PICBayes-package

Bayesian Models for Partly Interval-Censored Data and General Interval-Censored Data
da4

Clustered partly interva-censored data
clusterPIC_Z

Mixed effects PH model for clustered partly interval-censored data
da2

Clustered partly interva-censored data
da3

Clustered partly interva-censored data
clusterPIC_Z_DP

Mixed effects PH model for clustered partly interval-censored data
logLik.PICBayes

LogLik method for a PICBayes model
summary.PICBayes

Summary method for a PICBayes model