segReadsList: Segment the genome into candidate regions
Description
Pre-process bidirectional aligned reads data from a single ChIP-Seq experiment to detect candidate regions with a minimum number of forward and reverse reads. These candidate regions will then be processed by PICS.Methods
- [
signature(x = ``pics''): subset gadem object.- [[
signature(x = ``pics''): subset gadem object.
Methods
- length
signature(x = ``pics''): subset PICS object.
References
X. Zhang, G. Robertson, M. Krzywinski, K. Ning, A. Droit, S. Jones, and R. Gottardo, ``PICS: Probabilistic Inference for ChIP-seq'' arXiv, 0903.3206, 2009. To appear in Biometrics.