LR.cont

name or numeric vector corresponding to the SNP
 tested.

an object of class "formula" : a symbolic
 description of the model to be fitted without the
 interaction term.

formula

a data frame containing the variables in the
 model.

data

The <code>LR.cont</code> function performs a Wald test for a
 SNP effect. The function returns the p-value of the Wald
 test. It is an Internal function used by the
 <a rd-options="" href="/link/permutation.snp?package=PIGE&version=1.1" data-mini-rdoc="PIGE::permutation.snp">permutation.snp</a> function.

Extension of the 'ARTP' package (Yu, K., et al. (2009) <doi:10.1002/gepi.20422>) for gene- and pathway-environment interaction. A permutation and a parametric bootstrap approaches have been implemented for investigating gene- and pathway-environment interaction analysis (Truong, T., et al. (2014) <doi:10.1530/ERC-14-0121>).

Benoit Liquet

PIGE

Self Contained Gene Set Analysis for Gene- And
Pathway-Environment Interaction Analysis

LR.cont function

The <code>LR.cont</code> function performs a Wald test for a
 SNP effect. The function returns the p-value of the Wald
 test. It is an Internal function used by the
 <a rd-options='' href='permutation.snp'>permutation.snp</a> function.

LR.cont: Wald test for an adjusted model.

Description

Usage

Arguments

Value