KIRC

<p>The Cancer Genome Atlas Kidney Renal Clear Cell Carcinoma (TCGA-KIRC) data collection is part of a larger effort to build a research community focused on connecting cancer phenotypes to genotypes by providing clinical images matched to subjects from The Cancer Genome Atlas (TCGA). Clinical, genetic, and pathological data resides in the Genomic Data Commons (GDC) Data Portal while the radiological data is stored on The Cancer Imaging Archive (TCIA).</p>    
<p>This embed version of KIRC in PINPlus package is the reduced version of KIRC using Principle Component Analysis.</p>

datasets

Provides a robust approach for omics data integration and disease subtyping. PINSPlus is fast and supports the analysis of large datasets with hundreds of thousands of samples and features. The software automatically determines the optimal number of clusters and then partitions the samples in a way such that the results are robust against noise and data perturbation (Nguyen et al. (2019) <DOI: 10.1093/bioinformatics/bty1049>, Nguyen et al. (2017)<DOI: 10.1101/gr.215129.116>, Nguyen et al. (2021)<DOI: 10.3389/fonc.2021.725133>).

Van-Dung Pham

PINSPlus

Clustering Algorithm for Data Integration and Disease Subtyping

Hung Nguyen

Bang Tran

Duc Tran

Tin Nguyen

KIRC function

<p>A list containing properties:</p><table class="table">
<tr><td>Name</td><td>Type</td><td>Description</td><td>GE</td></tr>
<tr><td>data.frame</td><td>mRNA expression  data</td><td>ME</td><td>data.frame</td></tr>
<tr><td>DNA Methylation data</td><td>MI</td><td>data.frame</td><td>miRNA expression  data</td></tr>
<tr><td>survival</td><td>data.frame</td><td>Clinical survival data</td><td></td></tr>
</table><p></p><p></p>

Format

Kidney renal clear cell carcinoma dataset — KIRC

<p>A list containing properties:</p><table class='table'>
<tr><td>Name</td><td>Type</td><td>Description</td><td>GE</td></tr>
<tr><td>data.frame</td><td>mRNA expression  data</td><td>ME</td><td>data.frame</td></tr>
<tr><td>DNA Methylation data</td><td>MI</td><td>data.frame</td><td>miRNA expression  data</td></tr>
<tr><td>survival</td><td>data.frame</td><td>Clinical survival data</td><td></td></tr>
</table>



KIRC: Kidney renal clear cell carcinoma dataset

Description

Arguments

Format

References

Name	Type	Description	GE
data.frame	mRNA expression data	ME	data.frame
DNA Methylation data	MI	data.frame	miRNA expression data
survival	data.frame	Clinical survival data