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PKreport (version 1.5)

A reporting pipeline for checking population pharmacokinetic model assumption

Description

PKreport aims to 1) provide automatic pipeline for users to visualize data and models. It creates a flexible R framework with automatically generated R scripts to save time and cost for later usage; 2) implement an archive-oriented management tool for users to store, retrieve and modify figures. 3) offer powerful and convenient service to generate high-quality graphs based on two R packages: lattice and ggplot2.

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Version

Install

install.packages('PKreport')

Monthly Downloads

20

Version

1.5

License

GPL (>= 2)

Maintainer

Xiaoyong Sun

Last Published

March 18th, 2014

Functions in PKreport (1.5)

PKfigure

Diagnose model and generate figures
PKoutput

Output all results to folders and files
non.lst.objs-methods

Output objective function standard deviation in lst file
PKreport.4

Structural model diagnostics
PKclean

Clean related archives
PKcode

Generate R scripts
PKconfig

Data configuration
non.cov-methods

Output cov file
PKnum

Output numerical value
non.lst.objt-methods

Output objective function in lst file
non.tab-methods

Output tab content in tab file
PKreport.6

Parameters diagnostics
non.lst.objv-methods

Output objective function value in lst file
PKadjust

Update figures
non.cor-methods

Output cor file
non.coi-methods

Output coi file
non.phi-methods

Output phi file
non.lst.meth-methods

output method in lst file
PKreport-package

An automatically pipeline for population pharmacokinetic models
PKreport.5

Residual model diagnostics
PKreport.8

Random effects diagnostics
PKshow

Display results
nonmem-class

Class nonmem: contain and describe all nonmem output
PKreport.2

Individual plots
PKdata

Data input
non.select-methods

Output selected lines in lst files
non.lst-methods

Output lst content
pdata

A sample data
PKreport.3

Goodness-of-fit plots
PKreport.7

Covariate model diagnostics
PKreport.1

Exploratory data analysis
non.lst.term-methods

output analysis section in lst file