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PMAPscore (version 0.1.1)

get_final_signature: Identify the candidate prognosis-related pathways

Description

The function `get_final_signature` uses to identify the candidate prognosis-related pathways based on the PMAPscore.

Usage

get_final_signature(pfs_score, sur, wilcox_p = 0.05, uni_cox_p = 0.01)

Arguments

pfs_score

A 2 X n matrix that contains the pfs_score in each sample of the signal pathways. Noted the matrix can be generated by the function `get_pfs_score`.

sur

This data contains survival status and survival time of each sample.

wilcox_p

The threshold of p value for Wilcoxon rank-sum test.

uni_cox_p

The threshold of p value for univariate Cox regression analysis.

Value

Return the candidate prognosis-related pathways

Examples

Run this code
# NOT RUN {
#load the data.
data(pfs_score,sur)
#perform function `get_final_signature`.
final_signature<-get_final_signature(pfs_score,sur)
# }

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