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PMCMRplus (version 1.1.0)

Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended

Description

For one-way layout experiments the one-way ANOVA can be performed as an omnibus test. All-pairs multiple comparisons tests (Tukey-Kramer test, Scheffe test, LSD-test) and many-to-one tests (Dunnett test) for normally distributed residuals and equal within variance are available. Furthermore, all-pairs tests (Games-Howell test, Tamhane's T2 test, Dunnett T3 test, Ury-Wiggins-Hochberg test) and many-to-one (Tamhane-Dunnett Test) for normally distributed residuals and heterogeneous variances are provided. Van der Waerden's normal scores test for omnibus, all-pairs and many-to-one tests is provided for non-normally distributed residuals and homogeneous variances. The Kruskal-Wallis, BWS and Anderson-Darling omnibus test and all-pairs tests (Nemenyi test, Dunn test, Conover test, Dwass-Steele-Critchlow- Fligner test) as well as many-to-one (Nemenyi test, Dunn test, U-test) are given for the analysis of variance by ranks. Non-parametric trend tests (Jonckheere test, Cuzick test, Johnson-Mehrotra test, Spearman test) are included. In addition, a Friedman-test for one-way ANOVA with repeated measures on ranks (CRBD) and Skillings-Mack test for unbalanced CRBD is provided with consequent all-pairs tests (Nemenyi test, Siegel test, Miller test, Conover test, Exact test) and many-to-one tests (Nemenyi test, Demsar test, Exact test). A trend can be tested with Pages's test. Durbin's test for a two-way balanced incomplete block design (BIBD) is given in this package as well as Gore's test for CRBD with multiple observations per cell is given. Outlier tests, Mandel's k- and h statistic as well as functions for Type I error and Power analysis as well as generic summary, print and plot methods are provided.

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Version

Install

install.packages('PMCMRplus')

Monthly Downloads

17,349

Version

1.1.0

License

GPL (>= 3)

Maintainer

Thorsten Pohlert

Last Published

June 17th, 2018

Functions in PMCMRplus (1.1.0)

chaAllPairsNashimotoTest

All-Pairs Comparisons for Simply Ordered Mean Ranksums
cuzickTest

Testing against Ordered Alternatives (Cuzick's Test)
frdAllPairsExactTest

Exact All-Pairs Comparisons Test for Unreplicated Blocked Data
doubleGrubbsTest

Grubbs Double Outlier Test
kruskalTest

Kruskal-Wallis Rank Sum Test
durbinAllPairsTest

All-Pairs Comparisons Test for Balanced Incomplete Block Designs
gesdTest

Generalized Extreme Studentized Deviate Many-Outlier Test
frdAllPairsNemenyiTest

Nemenyi's All-Pairs Comparisons Test for Unreplicated Blocked Data
lsdTest

Least Significant Difference Test
dunnettTest

Dunnett's Many-to-One Comparisons Test
gamesHowellTest

Games-Howell Test
frdAllPairsMillerTest

Millers's All-Pairs Comparisons Test for Unreplicated Blocked Data
kwAllPairsConoverTest

Conover's All-Pairs Rank Comparison Test
kwAllPairsNemenyiTest

Nemenyi's All-Pairs Rank Comparison Test
frdAllPairsSiegelTest

Siegel and Castellan's All-Pairs Comparisons Test for Unreplicated Blocked Data
bwsManyOneTest

BWS Many-To-One Comparison Test
kwAllPairsDunnTest

Dunn's All-Pairs Rank Comparison Test
pageTest

Page Rank Sum Test
osrtTest

One-Sided Studentised Range Test
powerMCTests

Power Simulation for One-Factorial All-Pairs and Many-To-One Comparison Tests
mackWolfeTest

Mack-Wolfe Test for Umbrella Alternatives
plot.mandel

Plotting mandel Objects
powerOneWayTests

Power Simulation for One-Factorial Single Hypothesis Tests
qPCR

qPCR Curve Analysis Methods
plot.PMCMR

Plotting PMCMR Objects
quadeAllPairsTest

All-Pairs Comparisons for Unreplicated Blocked Data (Quade's All-Pairs Test)
summary.williams

Summarize an williams Object
summaryGroup

Grouped Summary of an PMCMR Object
shirleyWilliamsTest

Shirley-Williams Test
dscfAllPairsTest

Multiple Comparisons of Mean Rank Sums
goreTest

Gore Test
skillingsMackTest

Skillings-Mack Test
dunnettT3Test

Dunnett's T3 Test
frdManyOneDemsarTest

Demsar's Many-to-One Test for Unreplicated Blocked Data
durbinTest

Durbin Test
tamhaneDunnettTest

Tamhane-Dunnett Many-to-One Comparison Test
frdManyOneExactTest

Exact Many-to-One Test for Unreplicated Blocked Data
frdAllPairsConoverTest

Conover's All-Pairs Comparisons Test for Unreplicated Blocked Data
grubbsTest

Grubbs Outlier Test
tamhaneT2Test

Tamhane's T2 Test
kwManyOneConoverTest

Conover's Many-to-One Rank Comparison Test
kwManyOneDunnTest

Dunn's Many-to-One Rank Comparison Test
johnsonTest

Testing against Ordered Alternatives (Johnson-Mehrotra Test)
williamsTest

Williams Trend Test
frdManyOneNemenyiTest

Nemenyi's Many-to-One Test for Unreplicated Blocked Data
friedmanTest

Friedman Rank Sum Test
jonckheereTest

Testing against Ordered Alternatives (Jonckheere-Terpstra Test)
normalScoresManyOneTest

Lu-Smith Many-One Comparisons Normal Scores Test
leTest

Testing against Ordered Alternatives (Le's Test)
mandelhTest

Mandel's h test according to E 691 ASTM
kwManyOneNdwTest

Nemenyi-Damico-Wolfe Many-to-One Rank Comparison Test
mandelkTest

Mandel's k test according to E 691 ASTM
print.mandel

Mandel Printing
print.powerOneWayPMCMR

PowerOneWayPMCMR Printing
print.PMCMR

PMCMR Printing
normalScoresTest

Lu-Smith Normal Scores Test
summary.gesdTest

Summarize an gesdTest Object
reviewers

Reviewers
print.gesdTest

gesdTest Printing
manyOneUTest

Multiple Comparisons with One Control (U-test)
normalScoresAllPairsTest

Lu-Smith All-Pairs Comparison Normal Scores Test
summary.mandel

Object Summary for class "mandel"
tukeyTest

Tukey's Test
trout

Data from a Dose-Response Experiment with Trouts
print.powerPMCMR

PowerPMCMR Printing
print.williams

williams Printing
uryWigginsHochbergTest

Ury, Wiggins, Hochberg Test
spearmanTest

Testing against Ordered Alternatives (Spearman Test)
vanWaerdenAllPairsTest

van-der-Waerden's All-Pairs Comparison Normal Scores Test
summary.PMCMR

Summarize an PMCMR Object
scheffeTest

Scheffe's Test
vanWaerdenManyOneTest

van-der-Waerden's Many-One Comparisons Normal Scores Test
vanWaerdenTest

van der Waerden's Normal Scores Test
adKSampleTest

Anderson-Darling k-Sample Test
adAllPairsTest

Anderson-Darling All-Pairs Comparison Test
NPMTest

All-Pairs Comparisons for Simply Ordered Mean Ranksums
MTest

Extended One-Sided Studentised Range Test
Grubbs

Grubbs distribution
Pentosan

Pentosan Dataset
Mandel-h

Mandel's h distribution
Cochran

Cochran's distribution
Dgrubbs

Grubbs D* distribution
Mandel-k

Mandel's k distribution
adManyOneTest

Anderson-Darling Many-To-One Comparison Test
barPlot

Plotting PMCMR Objects
algae

Algae Growth Inhibition Data Set
chackoTest

Testing against Ordered Alternatives (Chacko's Test)
cochranTest

Cochran Test
bwsAllPairsTest

BWS All-Pairs Comparison Test
bwsKSampleTest

Murakami's k-Sample BWS Test
bwsTrendTest

Testing against Ordered Alternatives (Murakami's BWS Trend Test)