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PP3 (version 1.2)

Three-Dimensional Exploratory Projection Pursuit

Description

Exploratory projection pursuit is a method to discovers structure in multivariate data. At heart this package uses a projection index to evaluate how interesting a specific three-dimensional projection of multivariate data (with more than three dimensions) is. Typically, the main structure finding algorithm starts at a random projection and then iteratively changes the projection direction to move to a more interesting one. In other words, the projection index is maximised over the projection direction to find the most interesting projection. This maximum is, though, a local maximum. So, this code has the ability to restart the algorithm from many different starting positions automatically. Routines exist to plot a density estimate of projection indices over the runs, this enables the user to obtain an idea of the distribution of the projection indices, and, hence, which ones might be interesting. Individual projection solutions, including those identified as interesting, can be extracted and plotted individually. The package can make use of the mclapply() function to execute multiple runs in parallel to speed up index discovery. Projection pursuit is similar to independent component analysis. This package uses a projection index that maximises an entropy measure to look for projections that exhibit non-normality, and operates on sphered data. Hence, information from this package is different from that obtained from principal components analysis, but the rationale behind both methods is similar. Nason, G. P. (1995) .

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Version

Install

install.packages('PP3')

Monthly Downloads

14

Version

1.2

License

GPL (>= 2)

Maintainer

Guy Nason

Last Published

March 9th, 2018

Functions in PP3 (1.2)

PP3slowDF3

Compute the projection index or its derivative.
PP3ix3dvsFromTU

Compute the projection index or its derivatives from the T and U statistics.
PP3many

Main function to carry out three-dimensional projection pursuit.
print.PP3

Print information about a PP3 object.
summary.PP3

Print summary information about a PP3 object.
PP3-package

PP3
PP3init

Initialize projection pursuit code
getPP3index

Extract projection index values from a PP3 object.
getPP3loadings

Extract projection loadings from a PP3 object.
getPP3projdata

Extract projected data from a PP3 object.
ix3sizeplot

Plot a histogram of projection index values
pdataplot

Plots the projected data for a particular random start.
plot.PP3

Two types of plot for a PP3 object.
beetle

The Beetle Data