AddParSetting

The main interface function provides serveral PRECAST submodels, so a model setting is required to specified in advance for a PRECASTObj object.

An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.

Wei Liu

PRECAST

Embedding and Clustering with Alignment for Spatial Datasets

Yi Yang

Jin Liu

AddParSetting function

<dl> <dt>PRECASTObj</dt>
<dd>a PRECASTObj object created by CreatePRECASTObject.</dd> <dt>...</dt>
<dd>other arguments to be passed to model_set funciton.</dd></dl>

Arguments

Author

Add model settings  for a PRECASTObj object — AddParSetting

<dl>

 <dt>PRECASTObj</dt>
<dd>a PRECASTObj object created by CreatePRECASTObject.</dd>

 <dt>...</dt>
<dd>other arguments to be passed to model_set funciton.</dd>

</dl>

AddParSetting: Add model settings for a PRECASTObj object

Description

Usage

Value

Arguments

Author

Details

See Also

Examples