chooseColors

Choose color schema from a palette

An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.

Wei Liu

PRECAST

Embedding and Clustering with Alignment for Spatial Datasets

Yi Yang

Jin Liu

chooseColors function

<dl><dt>palettes_name</dt>
<dd>a string, the palette name, one of "Nature 10", "Light 13", "Classic 20", "Blink 23" and "Hue n", default as 'Nature 10'.</dd>
<dt>n_colors</dt>
<dd>a positive integer, the number of colors.</dd>
<dt>alpha</dt>
<dd>a positive real, the transparency of the color.</dd>
<dt>plot_colors</dt>
<dd>a logical value, whether plot the selected colors.</dd></dl>

Arguments

Choose color schema from a palette — chooseColors

<dl>

<dt>palettes_name</dt>
<dd>a string, the palette name, one of "Nature 10", "Light 13", "Classic 20", "Blink 23" and "Hue n", default as 'Nature 10'.</dd>


<dt>n_colors</dt>
<dd>a positive integer, the number of colors.</dd>


<dt>alpha</dt>
<dd>a positive real, the transparency of the color.</dd>


<dt>plot_colors</dt>
<dd>a logical value, whether plot the selected colors.</dd>

</dl>

chooseColors: Choose color schema from a palette

Description

Usage

Arguments

Examples