boxPlot

An efficient data integration method is provided for multiple spatial transcriptomics data with non-cluster-relevant effects such as the complex batch effects. It unifies spatial factor analysis simultaneously with spatial clustering and embedding alignment, requiring only partially shared cell/domain clusters across datasets. More details can be referred to Wei Liu, et al. (2023) <doi:10.1038/s41467-023-35947-w>.

Wei Liu

PRECAST

Embedding and Clustering with Alignment for Spatial Datasets

Yi Yang

Jin Liu

boxPlot function

<dl> <dt>mat</dt>
<dd>a matrix with columns.</dd> <dt>ylabel</dt>
<dd>an optional string, the name of ylabel.</dd> <dt>cols</dt>
<dd>colors used in the plot</dd> <dt>...</dt>
<dd>Other parameters passed to geom_boxplot.</dd></dl>

Arguments

Author

Boxplot for a matrix — boxPlot

<dl>

 <dt>mat</dt>
<dd>a matrix with columns.</dd>

 <dt>ylabel</dt>
<dd>an optional string, the name of ylabel.</dd>

 <dt>cols</dt>
<dd>colors used in the plot</dd>

 <dt>...</dt>
<dd>Other parameters passed to geom_boxplot.</dd>

</dl>

boxPlot: Boxplot for a matrix

Description

Usage

Value

Arguments

Author

Details

See Also

Examples