PREDA (version 1.18.0)

GenomicRegionsComparison: compare GenomicRegions objects to identify overlaps and differences

Description

compare GenomicRegions objects to identify overlaps and differences

Usage

GenomicRegionsComparison(.Object1, .Object2)

Arguments

.Object1

An object of Class GenomicRegions

.Object2

An object of Class GenomicRegions

Value

A list containing:

overlapping.regions

GenomicRegions object describing the overlapping regions between input object1 and object2

difference.1.2

GenomicRegions object describing the regions from input object1 not overlapping regions from object2

difference.2.1

GenomicRegions object describing the regions from input object2 not overlapping regions from object1

GenomicRegions1.number

Number of genomic regions in input object1

GenomicRegions2.number

Number of genomic regions in input object2

overlapping.number

Number of overlapping genomic regions between input object1 and object2

GenomicRegions1.totalspan

Total span of genomic regions in input object1

GenomicRegions2.totalspan

Total span of genomic regions in input object2

overlapping.totalspan

Total span of overlapping genomic regions between input object1 and object2

overlap.VS.GenomicRegions1.ratio

Ratio between overlapping regions and regions from input object1

overlap.VS.GenomicRegions2.ratio

Ratio between overlapping regions and regions from input object2

Details

Compare GenomicRegions objects to identify overlaps and differences

See Also

GenomicRegionsFindOverlap, GenomicRegions