Usage
GenomicRegionsFromdataframe(GenomicRegions_dataframe, ids_column=NULL, chr_column,
start_column, end_column, chromosomesNumbers=NULL,
chromosomesLabels=NULL, chromosomesLabelsInput=NULL)
Arguments
GenomicRegions_dataframe
Dataframe object containing the annotations for genomic regions
ids_column
Specify the column from the input dataframe with (optional) ids for genomic regions.
Can be specified using column index (numeric) or column name (character).
chr_column
Specify the column from the input dataframe with chromosome
annotations fields. Can be specified using column
index (numeric) or column name (character).
start_column
Specify the column from the input dataframe with genomic start
position for each genomic region. Can be specified using column
index (numeric) or column name (character).
end_column
Specify the column from the input dataframe with genomic end
position for each genomic region. Can be specified using column
index (numeric) or column name (character).
chromosomesNumbers
Numeric vector to specify the list of numeric values to be
associated to each chromosome (especially useful for chromosomes
not associated to a number such as chr X or Y)
chromosomesLabels
Character vector to specify the list of character labels to be
associated to each chromosome (especially useful for chromosomes
not associated to a number such as chr X or Y)
chromosomesLabelsInput
Character vector to specify the list of character labels
associated to each chromosome in the input. Particularly
useful when non numeric character strings are associated to
each chromosome in the input file: e.g. "chr3" for chromosome
"3".