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PROSPER (version 0.3.3)

Simulation of Weed Population Dynamics

Description

An environment to simulate the development of annual plant populations with regard to population dynamics and genetics, especially herbicide resistance. It combines genetics on the individual level (Renton et al. 2011) with a stochastic development on the population level (Daedlow, 2015). Renton, M, Diggle, A, Manalil, S and Powles, S (2011) Daedlow, Daniel (2015, doctoral dissertation: University of Rostock, Faculty of Agriculture and Environmental Sciences.)

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Version

Install

install.packages('PROSPER')

Monthly Downloads

219

Version

0.3.3

License

GPL-3

Maintainer

Christoph v. Redwitz

Last Published

June 27th, 2020

Functions in PROSPER (0.3.3)

intern_SimData

Extraction Simulation Data
gen_freq

generating the start values for PROSPER models
herb_check

Checking the main parameters link{sel_herb}
plot

Simple plot for prosper simulation results
mod_check

gen_diploid

Diploid genetics: recombination of alleles
PROSPER-pkg

PROSPER-pkg
intern_herbicide

Surviving the Herbicide
intern_SimData<-

replacement of Simulation Data
gen_check

Checking the plausibility and conversion of dom and af link{struc_preparation}
sel_resist

Calculating resistance values
sel_herb

Surviving the herbicide
struc_preparation2

Generating data input and output structures
quanti

Step by step: the model develops driven by field data
struc_endSim

Check for some stop conditions.
prosper-class

Class for PROSPER results
pop_step

Surviving a non-selective process
weed-parameters

Parameterisations for population dynamic models - Examples
prosper-models

Population dynamic models - Examples
prosper

Creation of a PROSPER object
pop_reprod

Seed production and crop yield
summary

Summary for prosper objects
pop_germc

Germination
struc_saveSimData

Saving simulation data
struc_addSimData

Wrapper for intern_SimData<- generic