PReMiuM (version 3.1.3)

heatDissMat: Plot the heatmap of the dissimilarity matrix

Description

Function to plot the heatmap of the dissimilarity matrix

Usage

heatDissMat(dissimObj, main=NULL, xlab=NULL, ylab=NULL)

Arguments

dissimObj

An object of class dissimObj.

main

The usual plot option, to be passed to the heatmap function.

ylab

The usual plot option, to be passed to the heatmap function.

xlab

The usual plot option, to be passed to the heatmap function.

Value

Plot of the heatmap of the dissimilary matrix. This functions uses the function 'heatmap' of package 'stats'. Note that this function has not been optimised for large datasets.

Authors

Silvia Liverani, Department of Epidemiology and Biostatistics, Imperial College London and MRC Biostatistics Unit, Cambridge, UK Maintainer: Silvia Liverani

References

Silvia Liverani, David I. Hastie, Lamiae Azizi, Michail Papathomas, Sylvia Richardson (2015). PReMiuM: An R Package for Profile Regression Mixture Models Using Dirichlet Processes. Journal of Statistical Software, 64(7), 1-30. URL http://www.jstatsoft.org/v64/i07/.

Examples

## Not run: 
# # generate simulated dataset
# generateDataList <- clusSummaryBernoulliDiscreteSmall()
# inputs <- generateSampleDataFile(generateDataList)
# 
# # run profile regression
# runInfoObj<-profRegr(yModel=inputs$yModel, xModel=inputs$xModel, 
#  nSweeps=10, nBurn=2000, data=inputs$inputData, output="output", 
#  covNames=inputs$covNames,nClusInit=15)
# 
# # compute dissimilarity matrix     
# dissimObj<-calcDissimilarityMatrix(runInfoObj)
# 
# # plot heatmap
# heatDissMat(dissimObj)
# ## End(Not run)