callAB.PairedPSCBS: Calls segments that are in allelic balance
Description
Calls segments that are in allelic balance, i.e. that have equal minor and major copy numbers.Usage
## S3 method for class 'PairedPSCBS':
callAB(fit, flavor=c("DeltaAB*"), ..., minSize=1, xorCalls=TRUE, force=FALSE)Arguments
flavor
A character string specifying which type of
call to use. ...
Additional arguments passed to the caller.
minSize
An optional integer specifying the minimum number
of data points in order to call a segments. If fewer data points,
then the call is set to NA re xorCalls
If TRUE, a region already called LOH, will
not be called AB. force
If FALSE, and allelic-balance calls already exits,
then nothing is done, otherwise the calls are done. Value
- Returns a
PairedPSCBS object with allelic-balance calls.