PSCBS (version 0.16.0)

callROH.PairedPSCBS: Calls segments that are in ROH

Description

Calls segments that are in ROH, i.e. that have no (true) heterozygous genotypes. Run of homozygosity (ROH) is a property of the normal (germline) sample.

Usage

## S3 method for class 'PairedPSCBS':
callROH(fit, ..., force=FALSE, verbose=FALSE)

Arguments

...

Additional arguments passed to testROH().

force

If FALSE, and ROH calls already exits, then nothing is done, otherwise the calls are done.

verbose

See Verbose.

Value

• Returns a PairedPSCBS object with ROH calls.

See Also

Internally, testROH() is used. To call allelic balance (AB) see *callAB(). To call loss of heterozygosity (LOH) see *callLOH().