dropChangePoints.AbstractCBS

AbstractCBS.dropChangePoints

dropChangePoints,AbstractCBS-method

An <code><a href="/link/integer?package=PSCBS&version=0.23.0&to=base" rd-options="base" data-mini-rdoc="base::integer">integer</a></code> <code><a href="/link/vector?package=PSCBS&version=0.23.0&to=base" rd-options="base" data-mini-rdoc="base::vector">vector</a></code> specifying the change points to be dropped.

idxs

If <code><a href="/link/TRUE?package=PSCBS&version=0.23.0&to=base%3Alogical" rd-options="base:logical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, segment statistics are updated.

update

Other arguments passed to <code><a href="/link/*dropChangePoint?package=PSCBS&version=0.23.0&to=PSCBS%3AdropChangePoint.AbstractCBS" rd-options="PSCBS:dropChangePoint.AbstractCBS" data-mini-rdoc="PSCBS:dropChangePoint.AbstractCBS::*dropChangePoint">*dropChangePoint</a>()</code>
             and <code><a href="/link/*updateMeans?package=PSCBS&version=0.23.0&to=PSCBS%3AupdateMeans.AbstractCBS" rd-options="PSCBS:updateMeans.AbstractCBS" data-mini-rdoc="PSCBS:updateMeans.AbstractCBS::*updateMeans">*updateMeans</a>()</code>.

Drops zero or more change points, which is done by dropping one change point at the
   time using <code><a href="/link/*dropChangePoint?package=PSCBS&version=0.23.0&to=PSCBS%3AdropChangePoint.AbstractCBS" rd-options="PSCBS:dropChangePoint.AbstractCBS" data-mini-rdoc="PSCBS:dropChangePoint.AbstractCBS::*dropChangePoint">*dropChangePoint</a>()</code>
   and recalculating the segment statistics at the end.

   <em>NOTE: This method only works if there is only one chromosome.</em>

methods

internal

Segments allele-specific DNA copy number data to detect
        regions with abnormal copy number within each parental
        chromosome

dropChangePoints.AbstractCBS: Drops zero or more change points

Description

Usage

Arguments

Value

See Also