estimateKappa.PairedPSCBS: Estimate global background in segmented copy numbers
Description
Estimate global background in segmented copy numbers.
The global background, here called $\kappa$,
may have multiple origins where normal contamination is one,
but not necessarily the only one.
Usage
## S3 method for class 'PairedPSCBS':
estimateKappa(this, flavor=c("density(C1)"), ...)
Arguments
flavor
A character string specifying which type of
estimator to use.
...
Additional arguments passed to the estimator.
Value
Returns the background estimate as a numeric scalar.