PSCBS (version 0.38.4)

getFractionOfGenomeLost.CBS: Calculates the fraction of the genome lost, gained, or aberrant either way

Description

Calculates the fraction of the genome lost, gained, or aberrant either way (in sense of total copy numbers), using definitions closely related to those presented in [1].

Usage

## S3 method for class 'CBS':
getFractionOfGenomeLost(fit, ...)

Arguments

...

Not used.

Value

• Returns a double in [0,1].

References

[1] Fridlyand et al. Breast tumor copy number aberration phenotypes and genomic instability, BMC Cancer, 2006.

See Also

Internally, *getCallStatistics() is used. For more information see CBS.