mergeThreeSegments.AbstractCBS

AbstractCBS.mergeThreeSegments

mergeThreeSegments,AbstractCBS-method

An <code><a href="/link/integer?package=PSCBS&version=0.38.4&to=base" rd-options="base" data-mini-rdoc="base::integer">integer</a></code> specifying the three segments
   (middle-1, middle, middle+1) to be merged.

middle

Additional arguments passed to <code><a href="/link/*mergeTwoSegments?package=PSCBS&version=0.38.4&to=PSCBS%3AmergeTwoSegments.AbstractCBS" rd-options="PSCBS:mergeTwoSegments.AbstractCBS" data-mini-rdoc="PSCBS:mergeTwoSegments.AbstractCBS::*mergeTwoSegments">*mergeTwoSegments</a>()</code>.

Merge a segment and its two flanking segments into one segment, and recalculating the segment statistics.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

mergeThreeSegments.AbstractCBS: Merge a segment and its two flanking segments

Description

Usage

Arguments

Value

See Also