Package: PSCBS
Class CBS
list
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AbstractCBS
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CBS
Directly known subclasses:
public abstract static class CBS
extends AbstractCBS
CBS(...)
AbstractCBS
.append
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as
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estimateStandardDeviation
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plotTracks
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pruneBySdUndo
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segmentByCBS
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seqOfSegmentsByDP
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writeSegments
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}Methods inherited from AbstractCBS: adjustPloidyScale, all.equal, append, as.data.frame, clearCalls, drawChangePoints, drawKnownSegments, dropChangePoint, dropChangePoints, dropRegion, dropRegions, extractCNs, extractChromosome, extractChromosomes, extractRegions, extractSegments, extractWIG, getChangePoints, getChromosomeOffsets, getChromosomeRanges, getChromosomes, getLocusData, getLocusSignalNames, getMeanEstimators, getSampleName, getSegmentSizes, getSegmentTrackPrefixes, getSegments, load, mergeThreeSegments, mergeTwoSegments, nbrOfChangePoints, nbrOfChromosomes, nbrOfLoci, nbrOfSegments, ploidy, ploidy<-, plotTracks, print, pruneByDP, pruneByHClust, renameChromosomes, report, resegment, resetSegments, sampleCNs, sampleName, sampleName<-, save, seqOfSegmentsByDP, setLocusData, setMeanEstimators, setPloidy, setSampleName, setSegments, shiftTCN, tileChromosomes, updateMeans, writeWIG
Methods inherited from list: all.equal, as.data.frame, attachLocally, callHooks, relist, within
segmentByCBS
() method returns an object of this class.