mergeTwoSegments.PairedPSCBS

PairedPSCBS.mergeTwoSegments

mergeTwoSegments,PairedPSCBS-method

An <code><a rd-options="base" href="/link/integer?package=PSCBS&version=0.63.0&to=base" data-mini-rdoc="base::integer">integer</a></code> specifying the segments (left, left+1)
 to be merged.

left

If <code><a rd-options="base:logical" href="/link/TRUE?package=PSCBS&version=0.63.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, segment statistics are updated.

update

A <code><a rd-options="base" href="/link/logical?package=PSCBS&version=0.63.0&to=base" data-mini-rdoc="base::logical">logical</a></code> or a <code><a rd-options="R.utils" href="/link/Verbose?package=PSCBS&version=0.63.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code> object.

verbose

Merge two neighboring segments by recalculating segment statistics.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

mergeTwoSegments.PairedPSCBS function

An <code><a rd-options='base' href='integer'>integer</a></code> specifying the segments (left, left+1)
 to be merged.

If <code><a rd-options='base:logical' href='TRUE'>TRUE</a></code>, segment statistics are updated.

A <code><a rd-options='base' href='logical'>logical</a></code> or a <code><a rd-options='R.utils' href='Verbose'>Verbose</a></code> object.

mergeTwoSegments.PairedPSCBS: Merge two neighboring segments

Description

Usage

Arguments

Value

See Also