updateMeansTogether.AbstractCBS

AbstractCBS.updateMeansTogether

updateMeansTogether,AbstractCBS-method

updateMeansTogether.CBS

updateMeansTogether.PairedPSCBS

A <code><a rd-options="base" href="/link/list?package=PSCBS&version=0.63.0&to=base" data-mini-rdoc="base::list">list</a></code>, where each element is an <code><a rd-options="base" href="/link/integer?package=PSCBS&version=0.63.0&to=base" data-mini-rdoc="base::integer">integer</a></code> <code><a rd-options="base" href="/link/vector?package=PSCBS&version=0.63.0&to=base" data-mini-rdoc="base::vector">vector</a></code>
 specifying segment indices of segments for which the mean levels
 should be calculated jointly.

idxList

See <code><a rd-options="R.utils" href="/link/Verbose?package=PSCBS&version=0.63.0&to=R.utils" data-mini-rdoc="R.utils::Verbose">Verbose</a></code>.

verbose

Updates the CN mean levels jointly in sets of segments as if they were one large segment.
 The locus-level data is not updated/modified.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

updateMeansTogether.AbstractCBS function

A <code><a rd-options='base' href='list'>list</a></code>, where each element is an <code><a rd-options='base' href='integer'>integer</a></code> <code><a rd-options='base' href='vector'>vector</a></code>
 specifying segment indices of segments for which the mean levels
 should be calculated jointly.

See <code><a rd-options='R.utils' href='Verbose'>Verbose</a></code>.

updateMeansTogether.AbstractCBS: Updates the CN mean levels jointly in sets of segments

Description

Usage

Arguments

Value

See Also