getSegments.AbstractCBS

AbstractCBS.getSegments

getSegments,AbstractCBS-method

AbstractCBS.setSegments

setSegments.AbstractCBS

setSegments,AbstractCBS-method

If <code><a rd-options="base:logical" href="/link/TRUE?package=PSCBS&version=0.66.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, redundant and intermediate information is dropped.

simplify

If <code><a rd-options="base:logical" href="/link/TRUE?package=PSCBS&version=0.66.0&to=base%3Alogical" data-mini-rdoc="base:logical::TRUE">TRUE</a></code>, "splitters" between chromosomes are
 preserved, otherwise dropped.

splitters

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

getSegments.AbstractCBS function

<dl> <dt>simplify</dt>
<dd>If <code><a href="/link/TRUE?package=PSCBS&version=0.66.0" data-mini-rdoc="PSCBS::TRUE">TRUE</a></code>, redundant and intermediate information is dropped.</dd> <dt>splitters</dt>
<dd>If <code><a href="/link/TRUE?package=PSCBS&version=0.66.0" data-mini-rdoc="PSCBS::TRUE">TRUE</a></code>, "splitters" between chromosomes are
 preserved, otherwise dropped.</dd> <dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Author

Gets the segments — getSegments.AbstractCBS

<dl>

 <dt>simplify</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, redundant and intermediate information is dropped.</dd>

 <dt>splitters</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, "splitters" between chromosomes are
 preserved, otherwise dropped.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

</dl>

Gets the segments

getSegments.AbstractCBS: Gets the segments

Description

Usage

Value

Arguments

Author

See Also