as.CBS.DNAcopy

DNAcopy.as.CBS

as.CBS,DNAcopy-method

Coerces a DNAcopy object to a CBS object.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

as.CBS.DNAcopy function

<dl> <dt>fit</dt>
<dd>A <code>DNAcopy</code> object (of the DNAcopy package.)</dd> <dt>sample</dt>
<dd>An index specifying which sample to extract,
 if more than one exists.</dd> <dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Author

Coerces a DNAcopy object to a CBS object — as.CBS.DNAcopy

<dl>

 <dt>fit</dt>
<dd>A <code>DNAcopy</code> object (of the DNAcopy package.)</dd>

 <dt>sample</dt>
<dd>An index specifying which sample to extract,
 if more than one exists.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

</dl>

Coerces a DNAcopy object to a CBS object

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as.CBS.DNAcopy: Coerces a DNAcopy object to a CBS object

Description

Usage

Value

Arguments

Author

See Also