hclustCNs.AbstractCBS

AbstractCBS.hclustCNs

hclustCNs,AbstractCBS-method

Performs a hierarchical clustering of the CN mean levels.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

hclustCNs.AbstractCBS function

<dl> <dt>size</dt>
<dd>Argument passed to <code>*sampleCNs()</code>.</dd> <dt>distMethod, hclustMethod</dt>
<dd>Argument <code>method</code> for
 <code><a href="/link/dist?package=PSCBS&version=0.67.0" data-mini-rdoc="PSCBS::dist">dist</a></code> and "stats::hclust", respectively.</dd> <dt>...</dt>
<dd>Not used.</dd> <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd></dl>

Arguments

Author

Performs a hierarchical clustering of the CN mean levels — hclustCNs.AbstractCBS

<dl>

 <dt>size</dt>
<dd>Argument passed to <code>*sampleCNs()</code>.</dd>

 <dt>distMethod, hclustMethod</dt>
<dd>Argument <code>method</code> for
 <code><a href='https://rdrr.io/r/stats/dist.html'>dist</a></code> and "stats::hclust", respectively.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

 <dt>verbose</dt>
<dd>See <code>Verbose</code>.</dd>

</dl>

Performs a hierarchical clustering of the CN mean levels

hclustCNs.AbstractCBS: Performs a hierarchical clustering of the CN mean levels

Description

Usage

Value

Arguments

Author

See Also