dropChangePoints.AbstractCBS

AbstractCBS.dropChangePoints

dropChangePoints,AbstractCBS-method

Drops zero or more change points, which is done by dropping one change point at the
 time using <code>*dropChangePoint()</code>
 and recalculating the segment statistics at the end.
NOTE: This method only works if there is only one chromosome.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

dropChangePoints.AbstractCBS function

<dl> <dt>idxs</dt>
<dd>An <code><a href="/link/integer?package=PSCBS&version=0.68.0" data-mini-rdoc="PSCBS::integer">integer</a></code> <code><a href="/link/vector?package=PSCBS&version=0.68.0" data-mini-rdoc="PSCBS::vector">vector</a></code> specifying the change points to be dropped.</dd> <dt>update</dt>
<dd>If <code><a href="/link/TRUE?package=PSCBS&version=0.68.0" data-mini-rdoc="PSCBS::TRUE">TRUE</a></code>, segment statistics are updated.</dd> <dt>...</dt>
<dd>Other arguments passed to <code>*dropChangePoint()</code>
 and <code>*updateMeans()</code>.</dd></dl>

Arguments

Author

Drops zero or more change points — dropChangePoints.AbstractCBS

<dl>

 <dt>idxs</dt>
<dd>An <code><a href='https://rdrr.io/r/base/integer.html'>integer</a></code> <code><a href='https://rdrr.io/r/base/vector.html'>vector</a></code> specifying the change points to be dropped.</dd>

 <dt>update</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, segment statistics are updated.</dd>

 <dt>...</dt>
<dd>Other arguments passed to <code>*dropChangePoint()</code>
 and <code>*updateMeans()</code>.</dd>

</dl>

Drops zero or more change points

dropChangePoints.AbstractCBS: Drops zero or more change points

Description

Usage

Value

Arguments

Author

See Also