estimateKappa.PairedPSCBS

PairedPSCBS.estimateKappa

estimateKappa,PairedPSCBS-method

Estimate global background in segmented copy numbers.
 The global background, here called \(\kappa\),
 may have multiple origins where normal contamination is one,
 but not necessarily the only one.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

estimateKappa.PairedPSCBS function

<dl> <dt>flavor</dt>
<dd>A <code><a href="/link/character?package=PSCBS&version=0.68.0" data-mini-rdoc="PSCBS::character">character</a></code> string specifying which type of
 estimator to use.</dd> <dt>...</dt>
<dd>Additional arguments passed to the estimator.</dd></dl>

Arguments

Author

Estimate global background in segmented copy numbers — estimateKappa.PairedPSCBS

<dl>

 <dt>flavor</dt>
<dd>A <code><a href='https://rdrr.io/r/base/character.html'>character</a></code> string specifying which type of
 estimator to use.</dd>

 <dt>...</dt>
<dd>Additional arguments passed to the estimator.</dd>

</dl>

Estimate global background in segmented copy numbers

estimateKappa.PairedPSCBS: Estimate global background in segmented copy numbers

Description

Usage

Value

Arguments

Author

See Also