mergeTwoSegments.PairedPSCBS

PairedPSCBS.mergeTwoSegments

mergeTwoSegments,PairedPSCBS-method

Merge two neighboring segments by recalculating segment statistics.

methods

internal

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.

Henrik Bengtsson

PSCBS

Analysis of Parent-Specific DNA Copy Numbers

Pierre Neuvial

Venkatraman E. Seshan

Adam B. Olshen

Paul T. Spellman

Richard A. Olshen

Frank E Harrell Jr

mergeTwoSegments.PairedPSCBS function

<dl> <dt>left</dt>
<dd>An <code><a href="/link/integer?package=PSCBS&version=0.68.0" data-mini-rdoc="PSCBS::integer">integer</a></code> specifying the segments (left, left+1)
 to be merged.</dd> <dt>update</dt>
<dd>If <code><a href="/link/TRUE?package=PSCBS&version=0.68.0" data-mini-rdoc="PSCBS::TRUE">TRUE</a></code>, segment statistics are updated.</dd> <dt>verbose</dt>
<dd>A <code><a href="/link/logical?package=PSCBS&version=0.68.0" data-mini-rdoc="PSCBS::logical">logical</a></code> or a <code>Verbose</code> object.</dd> <dt>...</dt>
<dd>Not used.</dd></dl>

Arguments

Author

Merge two neighboring segments — mergeTwoSegments.PairedPSCBS

<dl>

 <dt>left</dt>
<dd>An <code><a href='https://rdrr.io/r/base/integer.html'>integer</a></code> specifying the segments (left, left+1)
 to be merged.</dd>

 <dt>update</dt>
<dd>If <code><a href='https://rdrr.io/r/base/logical.html'>TRUE</a></code>, segment statistics are updated.</dd>

 <dt>verbose</dt>
<dd>A <code><a href='https://rdrr.io/r/base/logical.html'>logical</a></code> or a <code>Verbose</code> object.</dd>

 <dt>...</dt>
<dd>Not used.</dd>

</dl>

Merge two neighboring segments

mergeTwoSegments.PairedPSCBS: Merge two neighboring segments

Description

Usage

Value

Arguments

Author

See Also