scsh2

pssm_name

<p>a parameter indicates length of k-mer</p>

<p>This function gets a PSSM Matrix as input and extracts corresponding protein and consunsus
sequence from it. By placing these two vectors next to each other, a dataframe is created.
In each row of this dataframe, each component is connected to the next row components by an arrow. so a
directed graph is produced. next by use of previous functions a feature vector of length 400 or 8000 is created.</p>

Returns almost all features that has been extracted from Position Specific
Scoring Matrix (PSSM) so far, which is a matrix of L rows (L is protein length)
and 20 columns produced by 'PSI-BLAST' which is a program to produce
PSSM Matrix from multiple sequence alignment of proteins
see <https://www.ncbi.nlm.nih.gov/books/NBK2590/> for mor details. some
of these features are described in Zahiri, J., et al.(2013)
<DOI:10.1016/j.ygeno.2013.05.006>,
Saini, H., et al.(2016)
<DOI:10.17706/jsw.11.8.756-767>,
Ding, S., et al.(2014)
<DOI:10.1016/j.biochi.2013.09.013>,
Cheng, C.W., et al.(2008)
<DOI:10.1186/1471-2105-9-S12-S6>,
Juan, E.Y., et al.(2009)
<DOI:10.1109/CISIS.2009.194>.

scsh2: SCSH Feature vector

Description

Usage

Arguments

Value

References

Examples