MzQCanalysisSoftware-class

MzQCanalysisSoftware

Details of the software used to create the QC metrics

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

MzQCanalysisSoftware-class function

<dl>
<dt><code>accession</code></dt>
<dd>Accession number identifying the term within its controlled vocabulary (pattern: ^[A-Z]+:[A-Z0-9]+$).</dd></dl>
<dt><code>name</code></dt>
<dd>Name of the controlled vocabulary term describing the software tool.</dd>
<dt><code>version</code></dt>
<dd>Version number of the software tool.</dd>
<dt><code>uri</code></dt>
<dd>Publicly accessible URI of the software tool or documentation.</dd>
<dt><code>description</code></dt>
<dd>[optional] Definition of the controlled vocabulary term.</dd>
<dt><code>value</code></dt>
<dd>[optional] Value of the software tool.</dd>

Fields

Details of the software used to create the QC metrics — MzQCanalysisSoftware-class

<dl>
<dt><code>accession</code></dt>
<dd>Accession number identifying the term within its controlled vocabulary (pattern: ^[A-Z]+:[A-Z0-9]+$).</dd>


<dt><code>name</code></dt>
<dd>Name of the controlled vocabulary term describing the software tool.</dd>


<dt><code>version</code></dt>
<dd>Version number of the software tool.</dd>


<dt><code>uri</code></dt>
<dd>Publicly accessible URI of the software tool or documentation.</dd>


<dt><code>description</code></dt>
<dd>[optional] Definition of the controlled vocabulary term.</dd>


<dt><code>value</code></dt>
<dd>[optional] Value of the software tool.</dd>


</dl>

MzQCanalysisSoftware-class: Details of the software used to create the QC metrics

Description

Arguments

Fields