MzQCbaseQuality-class

MzQCbaseQuality

Base class of runQuality/setQuality

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

MzQCbaseQuality-class function

<dl>
<dt><code>metadata</code></dt>
<dd>The metadata for this run/setQuality</dd></dl>
<dt><code>qualityMetrics</code></dt>
<dd>Array of MzQCqualityMetric objects</dd>

Fields

Base class of runQuality/setQuality — MzQCbaseQuality-class

<dl>
<dt><code>metadata</code></dt>
<dd>The metadata for this run/setQuality</dd>


<dt><code>qualityMetrics</code></dt>
<dd>Array of MzQCqualityMetric objects</dd>


</dl>

MzQCbaseQuality-class: Base class of runQuality/setQuality

Description

Arguments

Fields