MzQCmetadata-class

MzQCmetadata

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

MzQCmetadata-class function

<dl>
<dt><code>label</code></dt>
<dd>Unique name for the run (for runQuality) or set (for setQuality).</dd></dl>
<dt><code>inputFiles</code></dt>
<dd>Array/list of MzQCinputFile objects</dd>
<dt><code>analysisSoftware</code></dt>
<dd>Array/list of MzQCanalysisSoftware objects</dd>
<dt><code>cvParameters</code></dt>
<dd>[optional] Array of cvParameters objects</dd>

Fields

The metadata for a run/setQuality — MzQCmetadata-class

<dl>
<dt><code>label</code></dt>
<dd>Unique name for the run (for runQuality) or set (for setQuality).</dd>


<dt><code>inputFiles</code></dt>
<dd>Array/list of MzQCinputFile objects</dd>


<dt><code>analysisSoftware</code></dt>
<dd>Array/list of MzQCanalysisSoftware objects</dd>


<dt><code>cvParameters</code></dt>
<dd>[optional] Array of cvParameters objects</dd>


</dl>

MzQCmetadata-class: The metadata for a run/setQuality

Description

Arguments

Fields