MzQCmzQC-class

MzQCmzQC

At least one of runQualities or setQualities MUST be present.

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

MzQCmzQC-class function

<dl>
<dt><code>version</code></dt>
<dd>Version of the mzQC format.</dd></dl>
<dt><code>creationDate</code></dt>
<dd>Creation date of the mzQC file.</dd>
<dt><code>contactName</code></dt>
<dd>Name of the operator/creator of this mzQC file.</dd>
<dt><code>contactAddress</code></dt>
<dd>Contact address (mail/e-mail or phone)</dd>
<dt><code>description</code></dt>
<dd>Description and comments about the mzQC file contents.</dd>
<dt><code>runQualities</code></dt>
<dd>Array of MzQCrunQuality;</dd>
<dt><code>setQualities</code></dt>
<dd>Array of MzQCsetQuality</dd>
<dt><code>controlledVocabularies</code></dt>
<dd>Array of CV domains used (obo files)</dd>

Fields

Root element of an mzQC document — MzQCmzQC-class

<dl>
<dt><code>version</code></dt>
<dd>Version of the mzQC format.</dd>


<dt><code>creationDate</code></dt>
<dd>Creation date of the mzQC file.</dd>


<dt><code>contactName</code></dt>
<dd>Name of the operator/creator of this mzQC file.</dd>


<dt><code>contactAddress</code></dt>
<dd>Contact address (mail/e-mail or phone)</dd>


<dt><code>description</code></dt>
<dd>Description and comments about the mzQC file contents.</dd>


<dt><code>runQualities</code></dt>
<dd>Array of MzQCrunQuality;</dd>


<dt><code>setQualities</code></dt>
<dd>Array of MzQCsetQuality</dd>


<dt><code>controlledVocabularies</code></dt>
<dd>Array of CV domains used (obo files)</dd>


</dl>

MzQCmzQC-class: Root element of an mzQC document

Description

Arguments

Fields