fromDatatoMzQC

The plain-R representation of your mzQC objects must be wrapped in an outer list,
if your mzQC object representation is already a list
because upon detecting lists, this function will call 'class$fromData(element)' for every element.

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

fromDatatoMzQC function

<dl><dt>mzqc_class</dt>
<dd>Prototype of the class to convert 'data' into</dd>
<dt>data</dt>
<dd>A datastructure of R lists/arrays as obtained by 'jsonlite::fromJSON()'</dd></dl>

Arguments

Allow conversion of plain named lists to mzQC objects — fromDatatoMzQC

<dl>

<dt>mzqc_class</dt>
<dd>Prototype of the class to convert 'data' into</dd>


<dt>data</dt>
<dd>A datastructure of R lists/arrays as obtained by 'jsonlite::fromJSON()'</dd>

</dl>

fromDatatoMzQC: Allow conversion of plain named lists to mzQC objects

Description

Usage

Arguments

Examples