getQualityMetricTemplate

Fills a MzQCqualityMetric object with id(accession) and name.
The value (if any) and unit (if any) need to be set afterwards.

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

getQualityMetricTemplate function

<dl><dt>accession</dt>
<dd>The ID (=accession) of the term in the CV</dd>
<dt>mzcv_dict</dt>
<dd>A CV dictionary, as obtained by getCVDictionary(); defaults to a singleton, which needs to be filled manually beforehand</dd></dl>

Arguments

Fills a MzQCqualityMetric object with id(accession) and name.
The value (if any) and unit (if any) need to be set afterwards. — getQualityMetricTemplate

<dl>

<dt>accession</dt>
<dd>The ID (=accession) of the term in the CV</dd>


<dt>mzcv_dict</dt>
<dd>A CV dictionary, as obtained by getCVDictionary(); defaults to a singleton, which needs to be filled manually beforehand</dd>

</dl>

getQualityMetricTemplate: Fills a MzQCqualityMetric object with id(accession) and name. The value (if any) and unit (if any) need to be set afterwards.

Description

Usage

Value

Arguments