writeMZQC

Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the
MaxQuant software suite (from .txt files) or mzTab files (ideally from OpenMS 'QualityControl' tool).
Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format.
Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015)
<doi:10.1021/acs.jproteome.5b00780>.

Chris Bielow

PTXQC

Quality Report Generation for MaxQuant and mzTab Results

writeMZQC function

<dl><dt>filepath</dt>
<dd>A filename (with path) to write to. Should have '.mzQC' as suffix.</dd>
<dt>mzqc_obj</dt>
<dd>An mzQC object, which is serialized to JSON and then written to disk</dd></dl>

Arguments

Writes a full mzQC object to disk — writeMZQC

<dl>

<dt>filepath</dt>
<dd>A filename (with path) to write to. Should have '.mzQC' as suffix.</dd>


<dt>mzqc_obj</dt>
<dd>An mzQC object, which is serialized to JSON and then written to disk</dd>

</dl>

writeMZQC: Writes a full mzQC object to disk

Description

Usage

Arguments