MotifEnrichmentReport

MotifEnrichmentReport-class


  The columns stored in this object will depend on the type
  of the report (either for group of sequences, or
  individual sequences).


A toolkit of high-level functions for DNA motif scanning
and enrichment analysis built upon Biostrings. The main
functionality is PWM enrichment analysis of already known PWMs
(e.g. from databases such as MotifDb), but the package also
implements high-level functions for PWM scanning and
visualisation. The package does not perform "de novo" motif
discovery, but is instead focused on using motifs that are
either experimentally derived or computationally constructed by
other tools.

Robert Stojnic

PWMEnrich

PWM enrichment analysis

MotifEnrichmentReport function

<dl>
<dt><code>d</code>:</dt><dd>a DataFrame object that
  contains the main tabular report data</dd> <dt><code>pwms</code>:</dt><dd>a list of <code>PWM</code> objects
  corresponding to rows of <code>d</code></dd>
 </dl> 

Slots

The columns stored in this object will depend on the type
  of the report (either for group of sequences, or
  individual sequences).

MotifEnrichmentReport: A report class with formatted results of motif enrichment

Description

Arguments

Slots