MotifEnrichmentResults

MotifEnrichmentResults-class


  Note that this is only a wrapper around a list which is
  the return value in PWMEnrich 1.3 and as such it provides
  the same interface as a list (for backward
  compatibility), with some additional methods.


A toolkit of high-level functions for DNA motif scanning
and enrichment analysis built upon Biostrings. The main
functionality is PWM enrichment analysis of already known PWMs
(e.g. from databases such as MotifDb), but the package also
implements high-level functions for PWM scanning and
visualisation. The package does not perform "de novo" motif
discovery, but is instead focused on using motifs that are
either experimentally derived or computationally constructed by
other tools.

Robert Stojnic

PWMEnrich

PWM enrichment analysis

MotifEnrichmentResults function

<dl>
<dt><code>res</code>:</dt><dd>a list of old results with
  elements such as: sequence.bg, sequence.nobg, group.bg,
  group.nobg</dd>
 </dl> 

Slots

Note that this is only a wrapper around a list which is
  the return value in PWMEnrich 1.3 and as such it provides
  the same interface as a list (for backward
  compatibility), with some additional methods.

MotifEnrichmentResults: A wrapper class for results of motifEnrichment() that should make it easier to access the results.

Description

Arguments

Slots